Publications

  1. Johnson AG, Grosely R, Petrov A, Puglisi JD (2017) Dynamics of IRES-mediated translation. Philos Trans R Soc B Biol Sci 372(1716):20160177.
  2. Chen J, Choi J, O’Leary SE, Prabhakar A, Petrov A, Grosely R, Puglisi EV, Puglisi JD (2016) The molecular choreography of protein synthesis: translational control, regulation, and pathways. Q Rev Biophys 49:e11.
  3. Petrov A, Grosely R, Chen J, O’Leary SE, Puglisi JD (2016) Multiple Parallel Pathways of Translation Initiation on the CrPV IRES. Mol Cell 62(1):92–103.
  4. Choi J, Ieong K-W, Demirci H, Chen J, Petrov A, Prabhakar A, O’Leary SE, Dominissini D, Rechavi G, Soltis SM, Ehrenberg M, Puglisi JD (2016) N6-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics. Nat Struct Mol Biol 23(2):110–5.
  5. Chen J, Coakley A, O’Connor M, Petrov A, O’Leary SE, Atkins JF, Puglisi JD (2015) Coupling of mRNA Structure Rearrangement to Ribosome Movement during Bypassing of Non-coding Regions. Cell 163(5):1267–1280.
  6. Fuchs G, Petrov A, Marceau CD, Popov LM, Chen J, O’Leary SE, Wang R, Carette JE, Sarnow P, Puglisi JD (2015) Kinetic pathway of 40S ribosomal subunit recruitment to hepatitis C virus internal ribosome entry site. Proc Natl Acad Sci 112(2):319–325.
  7. Chen J, Petrov A, Johansson M, Tsai A, O’Leary SE, Puglisi JD (2014) Dynamic pathways of −1 translational frameshifting. Nature 512(7514):328–332.
  8. Chen J, Dalal RV, Petrov AN, Tsai A, O’Leary SE, Chapin K, Cheng J, Ewan M, Hsiung P-L, Lundquist P, Turner SW, Hsu DR, Puglisi JD (2014) High-throughput platform for real-time monitoring of biological processes by multicolor single-molecule fluorescence. Proc Natl Acad Sci 111(2):664–9.
  9. O’Leary SE, Petrov A, Chen J, Puglisi JD (2013) Dynamic recognition of the mRNA cap by Saccharomyces cerevisiae eIF4E. Structure 21(12):2197–2207.
  10. Chen J, Tsai A, O’Leary SE, Petrov A, Puglisi JD (2012) Unraveling the dynamics of ribosome translocation. Curr Opin Struct Biol 22(6):804–814.
  11. Tsai A, Petrov A, Marshall RA, Korlach J, Uemura S, Puglisi JD (2012) Heterogeneous pathways and timing of factor departure during translation initiation. Nature 487(7407):390–393.
  12. Petrov A, Chen J, O’Leary S, Tsai A, Puglisi JD (2012) Single-molecule analysis of translational dynamics. Cold Spring Harb Perspect Biol 4(9).
  13. Chen J, Tsai A, Petrov A, Puglisi JD (2012) Nonfluorescent quenchers to correlate single-molecule conformational and compositional dynamics. J Am Chem Soc 134(13):5734–5737.
  14. Masuda T, Petrov AN, Iizuka R, Funatsu T, Puglisi JD, Uemura S (2012) Initiation factor 2, tRNA, and 50S subunits cooperatively stabilize mRNAs on the ribosome during initiation. Proc Natl Acad Sci 109(13):4881–4885.
  15. Petrov A, Kornberg G, O’Leary S, Tsai A, Uemura S, Puglisi JD (2011) Dynamics of the translational machinery. Curr Opin Struct Biol 21(1):137–145.
  16. Petrov A, Puglisi JD (2010) Site-specific labeling of Saccharomyces cerevisiae ribosomes for single-molecule manipulations. Nucleic Acids Res 38(13).
  17. Aitken CE, Petrov A, Puglisi JD (2010) Single Ribosome Dynamics and the Mechanism of Translation. Annu Rev Biophys 39(1):491–513.
  18. Petrov AN, Meskauskas A, Roshwalb SC, Dinman JD (2008) Yeast ribosomal protein L10 helps coordinate tRNA movement through the large subunit. Nucleic Acids Res 36(19):6187–6198.
  19. Liao PY, Gupta P, Petrov AN, Dinman JD, Lee KH (2008) A new kinetic model reveals the synergistic effect of E-, P- and A-sites on +1 ribosomal frameshifting. Nucleic Acids Res 36(8):2619–2629.
  20. Swatkoski S, Gutierrez P, Wynne C, Petrov A, Dinman JD, Edwards N, Fenselau C (2008) Evaluation of microwave-accelerated residue-specific acid cleavage for proteomic applications. J Proteome Res 7(2):579–586.
  21. Swatkoski S, Gutierrez P, Ginter J, Petrov A, Dinman JD, Edwards N, Fenselau C (2007) Integration of residue-specific acid cleavage into proteomic workflows. J Proteome Res 6(11):4525–4527.
  22. Baxter-Roshek JL, Petrov AN, Dinman JD (2007) Optimization of ribosome structure and function by rRNA base modification. PLoS One 2(1). doi:10.1371/journal.pone.0000174.
  23. Meskauskas A, Petrov AN, Dinman JD (2005) Identification of Functionally Important Amino Acids of Ribosomal Protein L3 by Saturation Mutagenesis. Mol Cell Biol 25(24):10863–10874.
  24. Kiparisov S, Petrov A, Meskauskas A, Sergiev PV., Dontsova OA, Dinman JD (2005) Structural and functional analysis of 5S rRNA in Saccharomyces cerevisiae. Mol Genet Genomics 274(3):235–247.
  25. Petrov A, Meskauskas A, Dinman JD (2004) Ribosomal protein L3: influence on ribosome structure and function. RNA Biol 22(5):629.
  26. Plant EP, Jacobs KLM, Harger JW, Meskauskas A, Jacobs JL, Baxter JL, Petrov AN, Dinman JD (2003) The 9-A solution: how mRNA pseudoknots promote efficient programmed -1 ribosomal frameshifting. RNA 9(2):168–74.
  27. Dorovkov MV, Pavur KS, Petrov AN, Ryazanov AG (2002) Regulation of Elongation Factor-2 Kinase by pH. Biochemistry 41(45):13444–13450.
  28. Pavur KS, Petrov AN, Ryazanov AG (2000) Mapping the Functional Domains of Elongation Factor-2 Kinase. Biochemistry 39(40):12216–12224.

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